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Biotechnology

Electroporation is widely used in microbial biotechnology due to its ability to induce reversible or irreversible permeabilization of bacterial, archaeal, and fungal cell membranes.

Applications in biotechnology

Electroporation is widely used in microbial biotechnology due to its ability to induce reversible or irreversible permeabilization of bacterial, archaeal, and fungal cell membranes. Key applications include genetic engineering of microorganisms, intracellular biomolecule extraction, microbial inactivation, and fundamental microbial research.

Applications of electroporation in biotechnology
Figure 1: Applications of electroporation in biotechnology (adapted with Biorender.com from 1).

Genetic engineering of microorganisms

Electroporation is a key tool for microbial genetic engineering, enabling the introduction of plasmid DNA, linear DNA fragments, RNA, or genome-editing systems (e.g., CRISPR–Cas) into bacteria and yeast via reversible electroporation, during which transient pores are formed in the cell membrane (Figure 2) 2. This approach facilitates the development of recombinant and engineered strains for diverse industrial, medical, and environmental applications. Additionally, electroporation provides a controlled system for studying DNA uptake mechanisms and membrane permeability, offering insights into horizontal gene transfer 3 and microbial physiology.

Introduction of different molecules into bacteria via reversible electroporation
Figure 2: Introduction of different molecules into bacteria via reversible electroporation. Illustration generated using Biorender.com.

Intracellular biomolecule extraction

Conventional biomolecule extraction methods typically rely on mechanical, chemical, or enzymatic disruption of microbial cell membranes, often resulting in extensive cell lysis and the concomitant release of intracellular contaminants such as host genomic DNA, lipopolysaccharides, and other endotoxins (Figure 3). In contrast, electroporation-mediated extraction enables the controlled and selective permeabilization of the cell membrane, allowing targeted release from microorganisms (e.g. bacteria, yeast, microalgae) of intracellular biomolecules (e.g. proteins, plasmid DNA, lipids, pigments) while preserving overall cellular integrity 4. This approach minimizes cell debris formation and significantly reduces contamination of the extracted product with undesired cellular components 5.

Treatment of bacteria: scanning electron images of Escherichia coli
Figure 3: Treatment of bacteria. Scanning electron images of Escherichia coli bacteria: (left panel) not treated; (middle panel) subjected to electroporation; and (right panel) mechanically disintegrated. Scale bars represent 200 nm. Reproduced from 6.

Microbial inactivation

Antibiotic-resistant bacterial infections represent an escalating challenge within contemporary healthcare systems. Despite the longstanding effectiveness of antibiotics in combating bacterial pathogens, their widespread overuse and misuse—particularly within the livestock industry—coupled with inadequate infection control practices, have significantly contributed to the emergence and spread of resistant bacterial strains 7. Accordingly, the development of effective strategies to mitigate antibiotic-resistant bacteria in wastewater is of critical importance. Our laboratory addresses this need by implementing a combined treatment strategy that employs both antibiotics and electroporation to inactivate resistant bacteria 8 (Figure 4). Electroporation has emerged as a highly promising adjunct technology, as it is effective against a broad spectrum of bacterial species, non-chemical in nature, and highly amenable to optimization.

Inactivation of the bacterial tetracycline efflux pump by electroporation
Figure 4: Inactivation of the bacterial tetracycline efflux pump by electroporation. The tetracycline pump reduces intracellular tetracycline levels by actively exporting the antibiotic at a rate that matches or exceeds its uptake. Electroporation likely denatures these efflux pumps, compromising their function and allowing tetracycline to accumulate to higher concentrations inside the bacterial cell, thereby mitigating antibiotic resistance. Reproduced from 8.

Fundamental microbial research

Electroporation profoundly influences bacterial cells by modulating their physiology, membrane characteristics, membrane potential, and permeability, as well as influencing metabolic activity and motility. It can enhance growth, biomolecule production, and cell organization. Harnessing these effects enables the precise tailoring of bacterial behaviour for diverse applications, including improved fermentation efficiency, extended cell viability, and controlled adhesion in biotechnology and pharmaceutical processes 9.

Publications
1Kotnik et al. (2015). Electroporation-based applications in biotechnology. Trends in BiotechnologyPDFDOI
2Fristot et al. (2023). An optimized electrotransformation protocol for Lactobacillus jensenii. PLOS ONEDOI
3Kotnik (2016). Lightning-Triggered Electroporation as a Mechanism for Horizontal Gene Transfer. Handbook of ElectroporationDOI
4Haberl Meglič (2025). Pulsed Electric Fields-Assisted Extraction of Molecules from Bacterial and Yeast Cells. Handbook of ElectroporationDOI
5Haberl Meglič et al. (2020). Evaluation and Optimization of Protein Extraction From E. coli by Electroporation. Frontiers in Bioengineering and BiotechnologyPDFDOI
6Meglič & Kotnik (2016). Electroporation-Based Applications in Biotechnology. Handbook of ElectroporationDOI
7Levy & Marshall (2004). Antibacterial resistance worldwide: causes, challenges and responses. Nature MedicineDOI
8Haberl Meglič, Slokar & Miklavčič (2024). Inactivation of antibiotic-resistant bacteria Escherichia coli by electroporation. Frontiers in MicrobiologyPDFDOI
9Dima, Chronakis & Mendes (2025). Electro-interactions: A review of the effects of electric fields on bacterial cells. Biotechnology AdvancesDOI
People
Tadej KotnikTadej KotnikAntimicrobial EP
Saša Haberl MegličSaša Haberl MegličMicrobial EP
Equipment
Gene Pulser Xcell (Bio-Rad)BetaTech Electro Cell B10
Related projects

Antimicrobial EP Potentiation (J2-50064)

Lactic Acid Bacteria EP

Extracting Molecules from Bacteria (J7-6783)